From Phisics Today
Pervez Hoodbhoy is chair and professor in the department of physics at Quaid-i-Azam University in Islamabad, Pakistan, where he has taught for 34 years. In this article, Professor Hoodbhoy explores, in great length, why the Islamic world is disengaged from science and the process of creating new knowledge.

Here is something interesting to read. “A generally tolerant and pluralistic Islamic culture allowed Muslims, Christians, and Jews to create new works of art and science together. But over time, the theological tensions between liberal and fundamentalist interpretations of Islam—such as on the issue of free will versus predestination—became intense and turned bloody. A resurgent religious orthodoxy eventually inflicted a crushing defeat on the Mutazilites. Thereafter, the open-minded pursuits of philosophy, mathematics, and science were increasingly relegated to the margins of Islam.” Familiar?
“In defending the compatibility of science and Islam, Muslims argue that Islam had sustained a vibrant intellectual culture throughout the European Dark Ages and thus, by extension, is also capable of a modern scientific culture. The Pakistani physics Nobel Prize winner, Abdus Salam, would stress to audiences that one-eighth of the Qur’an is a call for Muslims to seek Allah’s signs in the universe and hence that science is a spiritual as well as a temporal duty for Muslims. Perhaps the most widely used argument one hears is that the Prophet Muhammad had exhorted his followers to “seek knowledge even if it is in China,” which implies that a Muslim is duty-bound to search for secular knowledge. ” Not so different from the justification of science provided by others.
Here is his general view on science and religion:
“But the above reasoning is superficial and misleading. Science is fundamentally an idea-system that has grown around a sort of skeleton wire frame—the scientific method. The deliberately cultivated scientific habit of mind is mandatory for successful work in all science and related fields where critical judgment is essential. Scientific progress constantly demands that facts and hypotheses be checked and rechecked, and is unmindful of authority. But there lies the problem: The scientific method is alien to traditional, unreformed religious thought. Only the exceptional individual is able to exercise such a mindset in a society in which absolute authority comes from above, questions are asked only with difficulty, the penalties for disbelief are severe, the intellect is denigrated, and a certainty exists that all answers are already known and must only be discovered.”
http://ptonline.aip.org/journals/doc/PHTOAD-ft/vol_60/iss_8/49_1.shtml