{"id":1256,"date":"2010-09-30T16:23:49","date_gmt":"2010-09-30T20:23:49","guid":{"rendered":"http:\/\/blogs.law.harvard.edu\/kotrc\/?p=1256"},"modified":"2010-09-30T16:23:49","modified_gmt":"2010-09-30T20:23:49","slug":"seming-the-inevitable","status":"publish","type":"post","link":"https:\/\/archive.blogs.harvard.edu\/kotrc\/2010\/09\/30\/seming-the-inevitable\/","title":{"rendered":"SEMing the Inevitable"},"content":{"rendered":"<p>After a restorative run and morning squash game with Mark, I spent the morning preparing a second set of SEM stubs of the diatoms I had sonicated and cleaned yesterday afternoon (the batch I&#8217;d made yesterday seemed a little too dense, having left behind a thick chalky white dot where the water dried up). I booked the next available SEM slot, which\u2014miraculously\u2014was at 1pm today, raced to get the stubs sputter coated, and checked them out.<\/p>\n<p>The results are not far off what I expected to see\u2014a lot of flimsy, warped diatoms\u2014and also indicated that even the little sonicating I did yesterday (one blast of about 30 seconds or so, then three more short blasts of &lt;5 seconds) was too much for these weakly silicified things, turning most of the material into rubble.<\/p>\n<p>Here a selection of what I saw.<\/p>\n<p>Each sample had a sharp edge where the water droplet was\u2014with a lot of indiscriminate goop (organic matter?)\/fine-grained debris over most of the surface, except at the edge, where some coarser material was visible:<\/p>\n<p><a href=\"http:\/\/blogs.law.harvard.edu\/kotrc\/files\/2010\/09\/B100.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-medium wp-image-1257\" src=\"http:\/\/blogs.law.harvard.edu\/kotrc\/files\/2010\/09\/B100-300x225.jpg\" alt=\"\" width=\"300\" height=\"225\" srcset=\"https:\/\/archive.blogs.harvard.edu\/kotrc\/files\/2010\/09\/B100-300x225.jpg 300w, https:\/\/archive.blogs.harvard.edu\/kotrc\/files\/2010\/09\/B100.jpg 1024w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/a><\/p>\n<p>There were some moderately intact valves amidst the debris:<\/p>\n<p><a href=\"http:\/\/blogs.law.harvard.edu\/kotrc\/files\/2010\/09\/A104.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-medium wp-image-1258\" src=\"http:\/\/blogs.law.harvard.edu\/kotrc\/files\/2010\/09\/A104-300x225.jpg\" alt=\"\" width=\"300\" height=\"225\" srcset=\"https:\/\/archive.blogs.harvard.edu\/kotrc\/files\/2010\/09\/A104-300x225.jpg 300w, https:\/\/archive.blogs.harvard.edu\/kotrc\/files\/2010\/09\/A104.jpg 1024w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/a><\/p>\n<p>Many of those looked like they were so flimsy they were essentially warping or folding; some had very large-pored\/flimsy &#8220;skirts&#8221;:<\/p>\n<p><a href=\"http:\/\/blogs.law.harvard.edu\/kotrc\/files\/2010\/09\/A105.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-medium wp-image-1259\" src=\"http:\/\/blogs.law.harvard.edu\/kotrc\/files\/2010\/09\/A105-300x225.jpg\" alt=\"\" width=\"300\" height=\"225\" srcset=\"https:\/\/archive.blogs.harvard.edu\/kotrc\/files\/2010\/09\/A105-300x225.jpg 300w, https:\/\/archive.blogs.harvard.edu\/kotrc\/files\/2010\/09\/A105.jpg 1024w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/a><\/p>\n<p>The second set of samples I made were a little less crowded, but still far too dense:<\/p>\n<p><a href=\"http:\/\/blogs.law.harvard.edu\/kotrc\/files\/2010\/09\/C200.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-medium wp-image-1260\" src=\"http:\/\/blogs.law.harvard.edu\/kotrc\/files\/2010\/09\/C200-300x225.jpg\" alt=\"\" width=\"300\" height=\"225\" srcset=\"https:\/\/archive.blogs.harvard.edu\/kotrc\/files\/2010\/09\/C200-300x225.jpg 300w, https:\/\/archive.blogs.harvard.edu\/kotrc\/files\/2010\/09\/C200.jpg 1024w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/a><\/p>\n<p>Even the best-preserved specimens didn&#8217;t look like much:<\/p>\n<p><a href=\"http:\/\/blogs.law.harvard.edu\/kotrc\/files\/2010\/09\/D202.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-medium wp-image-1261\" src=\"http:\/\/blogs.law.harvard.edu\/kotrc\/files\/2010\/09\/D202-300x225.jpg\" alt=\"\" width=\"300\" height=\"225\" srcset=\"https:\/\/archive.blogs.harvard.edu\/kotrc\/files\/2010\/09\/D202-300x225.jpg 300w, https:\/\/archive.blogs.harvard.edu\/kotrc\/files\/2010\/09\/D202.jpg 1024w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/a><\/p>\n<p><a href=\"http:\/\/blogs.law.harvard.edu\/kotrc\/files\/2010\/09\/D207.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-medium wp-image-1262\" src=\"http:\/\/blogs.law.harvard.edu\/kotrc\/files\/2010\/09\/D207-300x225.jpg\" alt=\"\" width=\"300\" height=\"225\" srcset=\"https:\/\/archive.blogs.harvard.edu\/kotrc\/files\/2010\/09\/D207-300x225.jpg 300w, https:\/\/archive.blogs.harvard.edu\/kotrc\/files\/2010\/09\/D207-1024x768.jpg 1024w, https:\/\/archive.blogs.harvard.edu\/kotrc\/files\/2010\/09\/D207.jpg 2048w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/><\/a><\/p>\n<p>For comparison, this is what the species I&#8217;m looking at here \u2014<em>Lithodesmium undulatum\u2014<\/em>is actually supposed to look like (courtesy of <a href=\"http:\/\/www.protistcentral.org\/Project\/get\/project_id\/36#Lithodesmium%20undulatum\">this website<\/a>):<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone\" src=\"http:\/\/www.protistcentral.org\/Photo\/readPhoto\/photo_id\/725\" alt=\"\" width=\"608\" height=\"480\" \/><\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone\" src=\"http:\/\/www.protistcentral.org\/Photo\/readPhoto\/photo_id\/726\" alt=\"\" width=\"640\" height=\"435\" \/><\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"alignnone\" src=\"http:\/\/www.protistcentral.org\/Photo\/readPhoto\/photo_id\/724\" alt=\"\" width=\"640\" height=\"411\" \/><\/p>\n","protected":false},"excerpt":{"rendered":"<p>After a restorative run and morning squash game with Mark, I spent the morning preparing a second set of SEM stubs of the diatoms I had sonicated and cleaned yesterday afternoon (the batch I&#8217;d made yesterday seemed a little too dense, having left behind a thick chalky white dot where the water dried up). I [&hellip;]<\/p>\n","protected":false},"author":2222,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[14607,13584],"tags":[19986],"class_list":["post-1256","post","type-post","status-publish","format-standard","hentry","category-research-journal","category-timekeeping","tag-diatom-sonication"],"jetpack_featured_media_url":"","_links":{"self":[{"href":"https:\/\/archive.blogs.harvard.edu\/kotrc\/wp-json\/wp\/v2\/posts\/1256","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/archive.blogs.harvard.edu\/kotrc\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/archive.blogs.harvard.edu\/kotrc\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/archive.blogs.harvard.edu\/kotrc\/wp-json\/wp\/v2\/users\/2222"}],"replies":[{"embeddable":true,"href":"https:\/\/archive.blogs.harvard.edu\/kotrc\/wp-json\/wp\/v2\/comments?post=1256"}],"version-history":[{"count":2,"href":"https:\/\/archive.blogs.harvard.edu\/kotrc\/wp-json\/wp\/v2\/posts\/1256\/revisions"}],"predecessor-version":[{"id":1264,"href":"https:\/\/archive.blogs.harvard.edu\/kotrc\/wp-json\/wp\/v2\/posts\/1256\/revisions\/1264"}],"wp:attachment":[{"href":"https:\/\/archive.blogs.harvard.edu\/kotrc\/wp-json\/wp\/v2\/media?parent=1256"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/archive.blogs.harvard.edu\/kotrc\/wp-json\/wp\/v2\/categories?post=1256"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/archive.blogs.harvard.edu\/kotrc\/wp-json\/wp\/v2\/tags?post=1256"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}